NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10013056

Scaffold Ga0335074_10013056


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10013056 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11664
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002988Metagenome / Metatranscriptome515Y
F076312Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_100130563F002988GGAMNNVVFETQDLRVRIENKVARIDQRTLNAEPWKEIDQSVLPIPEQWFSSPVRSSPLKVALMAFERENPGDMTLRIALKS
Ga0335074_100130568F076312GAGVRTSALLCAGVCLFEGAGQAATARDAIITGPTAVATAANAYYCFERVRGLDPERLPEAYLVLRLRMRIEYLNEGARPVILPLERERIVYTALKPGKMNVFKPGLGLFDPVIKVMDALPPDVNPDNPVDPKNDVFAVIPAGGQMTPPLVEELTLPVSRKGLIRKYPDLRGHRVYVKLQFVHRALAPALEANLSDRWSRFGVPWTGTLTTNTILIDVPAAPQAEPCKDFNTPAHPALDEEVT
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