NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10019496

Scaffold Ga0335074_10019496


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10019496 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9570
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005654Metagenome / Metatranscriptome394Y
F008092Metagenome / Metatranscriptome339Y
F045437Metagenome / Metatranscriptome153Y
F092540Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_1001949613F005654N/AMSEENLLNRLRSRAAEKANAGTQYTTKDFQLEVLGQLSELQNLAAAMEQNWREELKAIKDQRLLKFDSRTLVALGAIALSITGYIVQDARNTARQDSEIESTKARVVRLEQIAATNTEGRIRTEEELAKLREGQAEIKVMIEAHDSATRKDRKER
Ga0335074_1001949614F045437GGALIEEEFGELRNIDRQFEREVLEKLSRLETKMDMLTGNGQPGRMTLAENRLTDLERNDVRRTVIERFVNASIALLVSVAIALRGHWWR
Ga0335074_1001949615F092540AGGAGGVSTPSTTIISNLKSASAPTANTLKAGGGAGIDIQGMLALAQSKALELKTCLTLLVRATDGADPNLATLNNILASLV
Ga0335074_1001949616F008092AGGAGGMSATPSTTIITNLKSVTAPTPNTITDSVAYGLDVGGMLAEVLEKAYELKACLTVLVAHTDSADPNLATMNNVLASLV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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