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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032895 Open in IMG/M |
| Scaffold ID | Ga0335074_10071507 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4683 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005) | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001698 | Metagenome / Metatranscriptome | 650 | Y |
| F013663 | Metagenome / Metatranscriptome | 269 | Y |
| F037832 | Metagenome / Metatranscriptome | 167 | Y |
| F057529 | Metagenome / Metatranscriptome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335074_100715073 | F013663 | N/A | VDGRPDRDGEEQLGLLGAAWEKTAQHWQDGVARQFETDHWAPLAERSRAYLGALRTLLDMLETAERDTEF |
| Ga0335074_100715075 | F001698 | AGGAG | MSGVINDIDALTEFRAHLIQFNRDLAENFATMRGHWRELGEVWRDDMYRLFGEALDEVTPGITTYLAATEGHEAHLAALAERLREYLETGVGAGAAAGTNRNESRR |
| Ga0335074_100715076 | F037832 | GAG | MTTQERIGEPAMVSPYVSLRQAVRPAIFAQFLLAEDRERAGRLAAECEDLLFLTRELLKAAGQAGILGDAPAESESPPPLDEDGGDRQEQLLGAYAQAGLLWAKVVGSTMALARSLLDRRDWDGARRLAGFLAEAGEDGAAAELRIQLGKAVWDTYREQLQAIGNRMPPAGIQTAIAALRALLLEVPEDYPDRNRQVNRFLPPLAASVHAVMREQKVDIPYSSRVEHIATGGVARYPDIVTLSLDEIAAEFEGICNRPGNE |
| Ga0335074_100715077 | F057529 | N/A | PAESDSLLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSVTSLYSFIRAAFESPA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |