NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10111920

Scaffold Ga0335074_10111920


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10111920 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3563
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037871Metagenome / Metatranscriptome167Y
F043794Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_101119201F037871N/ALHLSVEAVKQFMKRTDEDRQFGLEFAKRLRPFYEKALADGRTEKEFAQRLGVNRGGLQRYLRTGAMPSFRTIVLAYRELGIAIPYADTDAHALISGRGKRRRRNSDLQMNLPLTIEATNGEIDVVIKKKTSQRVRIQLRALKFG
Ga0335074_101119202F043794N/AVLASVLKGFDMSADQQARLGVELDYFGEHKTEWLAHRSGQYAVVKERELLGFYPSFETAYRAGAEHYGTDTDFLVKRILEYEPVFLVF
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Institute for Fundamental Biomedical Research
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