NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10359092

Scaffold Ga0335074_10359092


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10359092 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1613
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F026325Metagenome / Metatranscriptome198Y
F067465Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_103590921F067465N/AVIGLPLEVTLPKLRGIRWRYCTKSDEGPAAILGMGLLRLGICQPNDWSGSAVDFAERGFKRFCSQNHVAAAKRVWVGDLRITD
Ga0335074_103590922F003851AGGGGGMKRRKANTSSRRAIDKGAKRVLRALEDATRGRTNANDPIVEQLKQCPEAFKVGEILGKAFDSLKYAQDGAEHGDRCLPPAGTVMPPLV
Ga0335074_103590923F026325GGAGGMMTDPASAIKREVHQLVDLQIDTLRQPSCLTTSDLLDYRVRSQKIAVLYRELDQIRRASFKVQLRAAS
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