NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335075_10007460

Scaffold Ga0335075_10007460


Overview

Basic Information
Taxon OID3300032896 Open in IMG/M
Scaffold IDGa0335075_10007460 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16827
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F031575Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0335075_1000746018F000078GGAGMHCLRCNRALETGQKSVALYMFAQTVGIKPRQKSMAHRISFCPQCSVSLAMGPPPEGALNLAAWEMIRSLVASDPALSEAAWDNLSAVLGLLPATGTDGQSRSAPAAGYFEF
Ga0335075_100074609F031575N/AVTKLWFESTNLPGLRRNVVRYTLFLVLLAAAAEAQQPTPVAPAAPEPTATGAEEPLGTMVRNSKKQAATRAKKVITEDDMDALANKLPKIRTDGAENSDEIIAAIGEYKQNHTPEETEAAVQAWYERYDADLAAAIQHNQVVNSLREENLSNGYEICREGMDYQKCEGRRRAEYIGQRHDQLTIRENMILETRIQHVFMKVRGGMWRYNLHYDWFKIRTSNGIDMF
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