NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335075_10533492

Scaffold Ga0335075_10533492


Overview

Basic Information
Taxon OID3300032896 Open in IMG/M
Scaffold IDGa0335075_10533492 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1187
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F002850Metagenome / Metatranscriptome526Y
F004352Metagenome / Metatranscriptome442Y
F006905Metagenome / Metatranscriptome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0335075_105334921F004352AGGMNSRPEQDGDQQLRLLADAWDQAAEHWRDGPARQFGTDQLTPLLQESRSYLEALRKLMDLLET
Ga0335075_105334922F002850GAGVAAVHADIDALKGLHDALVRYRHAQREVAARGEDQVRSARSSLEERASRLRAQLELSQAEYAGCRERAAQAGPDDLPVDCSGYARAVGQVSERLEQVQLWQQRIDAAAGEFAGVAGRFASLLDGDLPRMEEQLAALISRLEAARRLQAPTS
Ga0335075_105334923F001698AGGAGMSGVVNDIEALAEFRSHLMRFNHDLAENFSTIQGHWRELGEVWRDDMYRLFGEALEEVLPGITAYLQATEGHEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGAGSSSETGRRGRGSR
Ga0335075_105334924F006905N/ARFLPPLAAAIGTVMKQQRVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGVCRRT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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