NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335075_10615883

Scaffold Ga0335075_10615883


Overview

Basic Information
Taxon OID3300032896 Open in IMG/M
Scaffold IDGa0335075_10615883 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1069
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013397Metagenome / Metatranscriptome271Y
F104731Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335075_106158832F104731AGGAGVMNLTLIDAFRRFGAKPESRLSSLSAMAADGAMVLNCQPAHFAHPARGILRYETSLSAAGADSKVVTVLGEHLTRARDASLPVRMIVTFPDGERTGKGGSYHVRPDLMGRIVEFDGDRFVIDFTRPEAATARPTGRRK
Ga0335075_106158833F013397GGAGMNSVAATFLIRERLRQRLLPRHDSWRCQGEYAGGCSCDGCGERITSAQASYEVDFPPGVTPQTVKLHRACFEIWLSEGESQPVS
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