NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335071_10056036

Scaffold Ga0335071_10056036


Overview

Basic Information
Taxon OID3300032897 Open in IMG/M
Scaffold IDGa0335071_10056036 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3880
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006575Metagenome / Metatranscriptome370Y
F045282Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0335071_100560361F045282N/ALTGIHADIDALKRLHGALVTYRHAQRDVTVRGEDQLRVTRASLESKASRCRAQLELSQAELGACQDRAAQDDTGGGTVDCSGYARAVEQCGERLEAIRRWQRR
Ga0335071_100560363F006575GGAGMTIEPGTATSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRSRILATASPPRMPDEGGGDRHAQLLEAYADAGLLWAKVVGSSLALAGALIERGEWEDVRALASFLAGAGEESAAGELRIQLGQAAWETHRGQLRAIGNDMPAAAVEPAINALRAVLREVPEEYPDRNREVNRFLPPLASAIHAIMKEQQADIPYHSRVEHIASGGVAKYPEIVKTSLDELAAEFEGICRRPGGKTT
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