NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10000022

Scaffold Ga0335072_10000022


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10000022 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)372695
Total Scaffold Genes330 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)290 (87.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000312Metagenome / Metatranscriptome1324Y
F003260Metagenome / Metatranscriptome497Y
F092532Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_10000022146F003260GGAMKNPLLAVGVCVLLLAGCQKQPQTDYNALERTGMWSSTLDELKGLKLSDLEIAQLTKLKNAGASDDLCVALVKAARAHNHEFSSGDSAMDLSRAGYADAQILEMAQSDQMDILSGEAVTLKLIGLSNATVQSIIHRRIQGLPTLTSEQIGRLKNTAMSEKQIIEIVNEGLSDQQAEALIARREAERDHSNTGFVRVRGRRPH
Ga0335072_1000002225F000312AGGAGGMNRSILIILIPALLVAAGYVVVLRMMGFPPGYPRLIIAMVLFFGAIYWLSKRSGKKANTSGQ
Ga0335072_10000022275F092532GGAMAKNKETSTRGAGKGQKLLSGTRDQLIKDLQRVHKVFPTAEPDRDFYRAHGKYSDAAVKVHFSRFKDFAAAAVPEMTPDEAFKLTVRNLDQAIDLTQKWHEDAEYDEGWDKHQTDAVNARVHKLDDLFFTWRLIKEMDAEEQAEEPVPTVVLPDPEF

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