NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10033896

Scaffold Ga0335072_10033896


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10033896 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7065
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000749Metagenome / Metatranscriptome908Y
F013245Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_100338962F000749GGGGGMRNYPISPKHTEATVTIRVSGKLFEGHLSYLDQLISSAVDCHLWPLLGLSDLHELDRAAILYLLRGEHSRFALVSCPPFVREWMDRERRQTAA
Ga0335072_100338964F013245AGGAGGMSATRFWIAVLGLLAFLAASGVGQEKNEIGGVIGRVFISDQGINASIPDATIHSGKGLTFGGEYTRRLFVTPVFSLSGEVVAVYNPDENLNAGGTNNAVVPNQYKQLFVTPAARLNLFPTTAVSPWVSFGGGFAHFSQSNTLDYGGANPGKSTTSGVLEGGVGLDVKLVGSVFIRGEARDFWSGEPDFPLAPTGKTRQHNYFVGGGVFWRF
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