NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10037719

Scaffold Ga0335072_10037719


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10037719 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6641
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002929Metagenome / Metatranscriptome520Y
F028635Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_1003771911F028635GAGGMAGAGRIVVWWDRDVDRAGRPIRPDVRLAGHEIWEQACQRTRVLLADCGPAAELMENAVAQVSRYLDRIGAPESSRKHALLMVAFCRALRRYRAKSTRLRLVGGPDELSNHTVDNTWVRQADARLELQNIVRQLNGRNGVVLMLRAAAYEWKEIAQLFGVSVAAVRNGFWREIEKIRRGIRNDLP
Ga0335072_100377197F002929AGAAGGMSQSFRPVKEIWNAHSSCFIEPEKLIVLLHDLAARVGSASDEHEYGDKQAVWLENGRKVLDYMEADERFNAASFKDSMEEQGVAVNGNDLITLIHNMRSLVNQWRSSIGEHGEVVFYIDA
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