NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10146699

Scaffold Ga0335072_10146699


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10146699 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2903
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001432Metagenome / Metatranscriptome696Y
F017529Metagenome / Metatranscriptome240Y
F063538Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_101466991F017529GGAGGMPNRSLSPAESIACPLCSGAGQLSRAEILDRLGVRDFARVAQLSAEEAFRLFQQKHGNENQQLWARFETELTKRTADSELRHRSEL
Ga0335072_101466992F001432GGAGGMTLRKEYIRGAKREILGSVTTGYSGGTSSIVRDEHNEITGRTSEQFNTVRDAHGNLVSINSSDPGLLIGHKK
Ga0335072_101466996F063538N/AMSNRYQIRLNGIIITEITIRPVVLDGVTDRRELVVCHQTLGEFAMDDNEGLADPALTKFILEVRDATIPPSERRYLANKGWKQMSTSDCLALLESAGAIRL
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