NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335083_10001529

Scaffold Ga0335083_10001529


Overview

Basic Information
Taxon OID3300032954 Open in IMG/M
Scaffold IDGa0335083_10001529 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31662
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F015314Metagenome / Metatranscriptome255N

Sequences

Protein IDFamilyRBSSequence
Ga0335083_1000152921F015314GGCGGMMLRRESWARLTRGRVPPLFVLRPLKGFTSSDIGDEYPAPDATNKVQLTRARQLYEQRRIGTREEVERALSRVPKHEPAEPGKEKRHGRQSGKNAR
Ga0335083_1000152924F002261GGAMANWPTIEALVDRVMLQTFGEPVVYQPVQSGAAQGDPFTVTAIRHLRPREESGANANFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS
Ga0335083_1000152925F003186N/AVINPKTILGEWVTALQACPDLVTAIGGTASNIRAFMEGLATDNNLRLAILQMQPGSILVAWNGTTPRRLAGGALHFAHHFSLYLRAPEQNSTATYADLFSLLVSAIPSGGESWQSLLHFQIDPGCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0335083_1000152930F000451GAGMARFQTVLKSARFIYSPYTATEMQGFAQVLADSIRARIQSGQNIYDQAAAPLKPGLPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEAAPWRRMTASQIASFNNHRERQWGVSPRDREAVLKAFLARPIVSIKAA
Ga0335083_1000152932F000335GGTGGMPGSLVQSEPNGVMPASLCTAFTELREYVQLQNQYHDGTIQRSQLAQTSRRTFQLSKRLNSSALSALYNFWVSQNAGLTPFAFYNPFDVASGQQIGSNYDPTGNETQGRVTVVFRGNWAQGTDIARTNVQGLDLVEVD
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