NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335083_10006050

Scaffold Ga0335083_10006050


Overview

Basic Information
Taxon OID3300032954 Open in IMG/M
Scaffold IDGa0335083_10006050 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15220
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006663Metagenome / Metatranscriptome367Y
F023890Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0335083_1000605013F006663N/AMVLAGLFAVSLGAQEKAAPEKKAAWPLSLADGLPKELPGYQAAPTDPLPDTDENEMGVFTQVARFFQRIENATTTRQFQLVVQDYGKDKNLEAALKQAMAEAAAHPGVETRDVVIAGLKAFAVTDRSSGQPTTLITVLVLPSRLVLAQGGNVDRDAAIKLLSHVDFPRVAAAK
Ga0335083_100060507F023890N/AVRRVRLVWSQSARRVDDRPRSLLLVSVLCIFLGGVVVGAGGRDLAEAPRPVRAVFASLLTTGAVLFVVSVALAAVRRTSRRGSARLTLARPLEDHAASDPERHFGQEERR
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