Scaffold Ga0335083_10014637

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335083_10014637

Scaffold Ga0335083_10014637

Overview

Basic Information
Taxon OID	3300032954 Open in IMG/M
Scaffold ID	Ga0335083_10014637 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9295
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F048471	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335083_100146371	F048471	N/A	MRNLGRITFALAYVFLGLNVLLVPPLLTPASVPRASGHFEEYCDGVGIFLAKVDGAPTSGRLVFFSYMGFPGGTFGGEYIGQGRWSDVSVFADGCVPDGKCQSIAHGRVWIDALDTPPKHISGKYEIKLNGKLIEGVFLAKRHDRKHPLRLCM
Ga0335083_100146374	F000042	AGGAG	MKNIKFIVKVNRGGTRAPAYVQRVDATPIQMTTNRKLALLMGKFTAEDAAKSLQTSQSIPELVSVSVTA

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