Scaffold Ga0335083_10031489

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335083_10031489

Scaffold Ga0335083_10031489

Overview

Basic Information
Taxon OID	3300032954 Open in IMG/M
Scaffold ID	Ga0335083_10031489 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5894
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F019104	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335083_100314892	F000072	N/A	MDAERTIAEIEWLERIFTTPDTRPLGPSDLSAANRRHDEKLAHSPWFRLWQRYGVCCRTESPTMRLGEIDS
Ga0335083_100314898	F019104	N/A	TRNLIVLRSEKKILTIAIVFSLGLAAFAKNSRLTGKIVAYDLMRHEAKAASGVQNQEVVVLETAGQKHKYVKVVFSSAAPTQIDQKYFAGTLPLTVDILRDRSCDEKYPSFMSQVSLERIAGRYLLTDAFKSSPPGRIKMLECYDAIYKKPAHD

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