NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335083_10279441

Scaffold Ga0335083_10279441


Overview

Basic Information
Taxon OID3300032954 Open in IMG/M
Scaffold IDGa0335083_10279441 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1477
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002408Metagenome / Metatranscriptome562Y
F025071Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0335083_102794411F025071N/AMIHHPENQRREMSNGEAGVVGAVLGFGLIALALYLVVARFHIRKEQLVEAALYLFIITAAVLTPVLRKFSKAGQRRKRPPFVIPARKDERAIEAAWNQNAVLLG
Ga0335083_102794414F002408N/ALVGAAAPPKATLDVLIRDIYRRQEQVFVRYSIENRSSQTFRTGRPTAVSLNVVRFDRSLWTFQNSQLGTDVASRLRADDTPIPVKVTQAEPGIAEVAPGEVRLGVMAMELPAPKADTKKAQPTVLQILFPVDRSGNLTATLVL
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Institute for Fundamental Biomedical Research
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