NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10000522

Scaffold Ga0335076_10000522


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10000522 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35938
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (83.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001463Metagenome / Metatranscriptome690Y
F016424Metagenome / Metatranscriptome247Y
F042115Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_1000052228F016424GAGGVAKPASKSPRKTVRDEKSEFGKDRRRRHHHFLVTVNYADGETFGRVYTDKDKATRFAERQRRSPIVKSARVTQVS
Ga0335076_1000052229F001463AGGAMMIIDKQPPLVEDLRNHSPEQIAELRLLLNTGLTGRPDQRRPGFYELDGMDNVYYIFRYPTGHKVLLVAAWQRGFDPVAELVAYSRPAA
Ga0335076_100005224F042115GAGGMVMTVKPTNRSHRIAFLVMLLLLAVALTTALVLAGEKNPEGNTTSSQQTNTVSTLSDVCLSGPSNA
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