NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10005084

Scaffold Ga0335076_10005084


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10005084 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13324
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010204Metagenome / Metatranscriptome307Y
F012173Metagenome / Metatranscriptome283Y
F018587Metagenome / Metatranscriptome234Y
F018838Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_1000508418F018838AGGAGMLPNQNKQQNQMCFQIHKNGAPVDGVSYATLVEASVALERAGQGGEVTAVNGLDQIVRRYTMDECRNARNSR
Ga0335076_1000508421F010204GGAGMRNVREQTRVLGPIYQLVGEGLNDEGIAVQLGLTEVKVRGCIAWIVDFLELNSRQELVLYASTAA
Ga0335076_1000508423F018587GAGMDTVLRPLMVRARSLRAFIAASLRKMLRMEPRDGDFASQRVCPFCGRITPRYETRCLECGKVLKAA
Ga0335076_100050846F012173N/AMNTTLPPPSLLSAPTPGGLKKKRVLLVDTCQAKRELRAEVMRKFGMDVDCAANADEARSWWKADFYDLVLINMEQSREYRDKFCDDIRSATPPQRLAFLVGQPEYLADSPNGDGESPQQNADDLIVGDMRLALAADRGDPSQRWGILEASRRISAVRSKSLARTQAMRALPDLPRDSEGRASKRTPTATNLDDLLREELR
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