NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10108740

Scaffold Ga0335076_10108740


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10108740 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2700
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006029Metagenome / Metatranscriptome383Y
F012474Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_101087401F006029N/AMSTPVPSGYLRLTERTSDFKNIDPSTVDQHFAEVTKMNKVSLLVSTGILLIIVGCSADSQKTASKNAPAVVQASAAPATLSLTIQPTAAQLPIPSVGHPNQQSWRSENVGAPPGNVVTLKATSTDGKFDLVILHEGTHCFLSFVRHAHWNAVHNQPAKGKLMYLRAKFDDGQEKRIEWDELGFATENLYSVLWSYPAKADAPIGPAPSGSASDSVGGDQLLIQEMVKHNTMLLEVEPGVTAQFDMAGLAHEMEKVCTLKTQAVLEARQTSE
Ga0335076_101087402F012474AGGAMKRTLSVGAILLFGASISLTVGAEGVTAQGPAGAGAAAAQDSSQSINPLKWVKKDSKNSTEESRSDVEKKLTPNLQAQAVLATNVTVTDACASFTALDGCLAALHASHNLPVDFNCLRAYVTGVHTSADMSGCKAADEEKTHSLAKAIHELKPGANAKQATKEAEQQAKDDLKEIGG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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