NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10559745

Scaffold Ga0335076_10559745


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10559745 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1026
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_105597451F000781N/AASVNATSQAAGVDPATPAPAPTQVASINVQASNGWFDISITDPSNSRPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAYSQYIGSLPSPPITFGSPPTAVAGGGAAGPAPLPSSGSGALTNNQARGGNGFGINPGSRITRQTIL
Ga0335076_105597452F000703N/AMTRGLKTAATAMLVREYRESDLAALRAIHAGQGFAYPLPDLANPLFVTKLILSEDSPRHSIDRDPGEGAAKSPSPQEKIIGAALLRLTAETYLLLDPTAGTPRQRWQWLLQLHAAAERDAWQRGLEDVHAWLPPSIARKFGRRLTHLGWRRDDAW
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