NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335084_10043536

Scaffold Ga0335084_10043536


Overview

Basic Information
Taxon OID3300033004 Open in IMG/M
Scaffold IDGa0335084_10043536 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4623
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000348Metagenome / Metatranscriptome1250Y
F092524Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335084_100435363F000348AGTAGVLGNLRLKKALLILAAAIAPILIVTLVRAAGEWRPIGQTGAGDKISISSVRVLKNNQRSALVRVEYKEPAQLPQGGPFTEMRARVRFNCTNGTATPTTQWFYTRDHSGRSVVSKKATRDDHFGKEPEGGFGDLVRENVCSQTK
Ga0335084_100435366F092524GGAMSFMRAHKQKNLIDENIWTGLACLKANPKVKNFRRFGKGKGAYVNVVAWANSRTEFEQKVKRHTDSLDCILVELENVQLLEARIGQDDFPEELITMRQTANRQQEDTIWGTFHIWHQEGA
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