NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335084_10111076

Scaffold Ga0335084_10111076


Overview

Basic Information
Taxon OID3300033004 Open in IMG/M
Scaffold IDGa0335084_10111076 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2850
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070071Metagenome / Metatranscriptome123N
F080214Metagenome115N
F087420Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335084_101110761F070071N/AEAFDMLTVIGAAMVAGTSAGFWYLLPRNGNEHPLVQNNGVGSMVTIVILTLFIVGVAVMCEGLLG
Ga0335084_101110763F080214AGGAMKADAGSRDPVATFGMARKKSHKSILLRFTEALKESRRRQARRVIATYAHLLAARDTPDDDNHH
Ga0335084_101110766F087420AGGMREQPQMRSKFGACAKRSAAGGAIALALSGLPHAPASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRHYWYCR
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