NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335084_10404135

Scaffold Ga0335084_10404135


Overview

Basic Information
Taxon OID3300033004 Open in IMG/M
Scaffold IDGa0335084_10404135 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002144Metagenome / Metatranscriptome590Y
F008460Metagenome / Metatranscriptome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0335084_104041351F002144AGGAGMSYAMFAPCPHCDAPLAYLEGAAGSTMTPQCPRCHEVVAVQRAAFLMADHSRPRAQAKPRGGAPGSVD
Ga0335084_104041353F008460AGGAGMPTDNADDLVPFLDVTVISATSPALLCRIGEKSVWLPRRHISGRLWCVGDRGRLLVRRWLARERQLIAGHRTLAVAARHSAHLRIVRGERLPFPSAD

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