NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335084_10805548

Scaffold Ga0335084_10805548


Overview

Basic Information
Taxon OID3300033004 Open in IMG/M
Scaffold IDGa0335084_10805548 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0335084_108055481F010139AGGAGMDSVFMRSPEGEVKEVEATAEKLTPLMVAGWHQVPAPIVANQKPVVAAEEEKLHGEH
Ga0335084_108055482F003186N/AVINPKTILGEWVTALQSCPDLVAAIGGDANDIRAFMEGLATDNNLRLAVLQMPPGSILVAWNGTTPRRLAGGALHFAHRFSLYLRAPEQDSTATYADLFWLLVSAKPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0335084_108055483F002261N/AFGELVVYQPVRAAAAQGNPFTVTAIRHLRPRDESGATASFEEISVDPSDFTNPPAKGDWVTAWGTQFVVTTVRQPDAYGMLNLALLQRS
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