NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335073_10003928

Scaffold Ga0335073_10003928


Overview

Basic Information
Taxon OID3300033134 Open in IMG/M
Scaffold IDGa0335073_10003928 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20718
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (64.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026986Metagenome / Metatranscriptome196Y
F042994Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0335073_1000392816F042994N/AVDFYDSTQPAKIPAGSHACLYFDGDYAATTEQAKRFAATRWITVLGDYRNCGIADFEAGNEVYSKPGALRAFVEGRRSMNVRARVYCDLANLPTVRSELEGLNYLVWLATLDGNKLSAGYTPGLWGVQYAGGPTAAYDTSILYGVW
Ga0335073_1000392823F026986AGGAMSKLYLYFGTVKSAGGGRHIMAWAGSREHALTLVEAALTATEPVQGSVVGPLMSLPGDIMKPGVYVEATPPSTA
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