NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335073_10068167

Scaffold Ga0335073_10068167


Overview

Basic Information
Taxon OID3300033134 Open in IMG/M
Scaffold IDGa0335073_10068167 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4688
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052529Metagenome142N
F077068Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0335073_100681675F052529GAGGMTYCARFAVLAVLVCVLGFDCFAQSHSLAAAVTKPIDKQPYGGADAGVVPLAYPYSISTEPHFAIFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIVKQIEAPAAKSKTPIETNMLVYMSSGRVVNITLKAGKLEDTAYSIDYSVPTAQPKDDPPPVSKEELERRLRDQERTDVAENMIAEVKEHPKSQAGVVAGELDLRFYSEKRLGALALVSFDVENTSSETVDLEDPQVNLITASNNPKDRKKPLVKTEPVEIAQSIVSLKQLPPGAHSACLVAFKPPVHDSDQQVVLSVSNRAMADKPATYRLE
Ga0335073_100681676F077068AGTAGGMNNGFKTEIIEPQQHVAVVDAGPQSDEELAAKAFEEIRSTERLSGFGRFATKLQNFFQASKPQQSRQRVLHLKAAPIMMSAGLLLLFATGLLFLLSKPESTVPSHFRQPVGLAGSDRQNTATGAAAEPLVTEDQLAGQDASTDVGTASSTSKKGALETPSAHRFSFAD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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