NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335073_10376370

Scaffold Ga0335073_10376370


Overview

Basic Information
Taxon OID3300033134 Open in IMG/M
Scaffold IDGa0335073_10376370 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1671
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F019896Metagenome / Metatranscriptome227Y
F057062Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0335073_103763701F019896N/ALRGLKSDRSLWGFQNSQLGVDVASRLKSDGTPIPVKIRPCEPGIAEVAAGGARIGVMALELPPANADTKKAQPTVLQILFPVDRSGNLTATLVL
Ga0335073_103763702F001473GGAGMETRYQTVGEMYERLQLMIRQRGDTGFRLAVRDAVLQPRNPFEPANKRRPKPALAIAISVVLALAFVFSYFSFHHGA
Ga0335073_103763703F057062N/AMAMLEREGIRSLVSDSAGLPSAADYACTGLQPETHLQEELFSDVISSVCYWSTVILLALVGAGLLCWRLRHPGSATVPTGDPFGISTPPWMMLSLPPIGVAASLSHAAWCAARGRRAWRMLMTAASLIAVMSATAVFETFLTAL
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