NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335073_10388328

Scaffold Ga0335073_10388328


Overview

Basic Information
Taxon OID3300033134 Open in IMG/M
Scaffold IDGa0335073_10388328 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1638
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007196Metagenome / Metatranscriptome356Y
F034683Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0335073_103883282F007196GGAGVPETAEPYDLPFPDHWPPRRPAYVVVVDQLRDWRPGQPPSLAELLDAGPARTGEPEPDLEAEP
Ga0335073_103883283F034683N/AMTSGHRVTSGLIHDILDALERHGYYRGDDQHADRAIGLIGDLAGIYEGTQDHPAGACPIAVPPPPLSYPGPSRHDAVTLTRADAITVFAALDIAADDKRYRAEMCPQCPDQSCPACQTHLRDAQAFDQMAGRMLQAAQATPAAVASKPAPDRWSQPAADREAGQ
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