NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335073_10979948

Scaffold Ga0335073_10979948


Overview

Basic Information
Taxon OID3300033134 Open in IMG/M
Scaffold IDGa0335073_10979948 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012935Metagenome / Metatranscriptome276Y
F052743Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0335073_109799481F012935N/AEGDYGRPSEISARLVRLADKGPDAGIHVVAWTDSYATAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSTASLYAFAREGFLIGSGKWSPA
Ga0335073_109799482F052743GGAGMEPSMTIESATATSPYLGLRRAVRPAILAHRLLAGDQERAGKLAAECEDLLYLTGELLKAAGRARILAADPPPGMPDEGRGERQAQLLEAYADAGLLWAKVVGSSLALAGALIERGEWEDVRTLASFLASVGEDDAAAGLRHQLGRAAWDAHREQLRAISNTMPSAAIEPAIDAL
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