NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335077_10117802

Scaffold Ga0335077_10117802


Overview

Basic Information
Taxon OID3300033158 Open in IMG/M
Scaffold IDGa0335077_10117802 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3093
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000822Metagenome / Metatranscriptome876Y
F001220Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0335077_101178023F001220N/AMVVWIVAAGALLVGLPRAIAQARVIEVTADSDSRYKIAGLRTPEIRVKAGEQILLRVTARRAKSWNRDGSIHGFTLLRAKDRTKVEGWDLLFKPGKQEFLRTVPSEAGEYVVVCTVICSEEHEGMHMKFTVLP
Ga0335077_101178024F000822GGAGMNRTLNSRFLLGCAAGLLVLANTAYGQTQRVFHGEVSDSQCALNVHSLTRSHQEMLKSKSMGGTANTCAVYCIEHLGGYLVLSAGDDVYRLDRADLVHGFEGQRVKITGTLDVKLKQIHVLKIDLEEKP
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