Scaffold Ga0335077_10204395

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335077_10204395

Scaffold Ga0335077_10204395

Overview

Basic Information
Taxon OID	3300033158 Open in IMG/M
Scaffold ID	Ga0335077_10204395 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2218
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001678	Metagenome / Metatranscriptome	653	Y
F028231	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335077_102043951	F001678	GAGG	MRHLSVWIVEFLKLLGGRRLHPIAAQCPICRQMVQLHVNKAGRQHVYGHARGLYEGSRFSAHYAAEMKCVGSDSPTAFDPRPSEH
Ga0335077_102043953	F028231	N/A	MRLPWGEAMHIKHKFVFALALLTPAVFADCAQAQTIEQVATNISLKNGESTELGDLFFINMNCKSLLKATPEVEIMDGPPGVTAAVNAAKVVPRGYSCANPVAGGKLVISAKDVDDYSLTRLVLRINYNTVNGPRQRTWNINLALFPSN

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