NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335077_10251137

Scaffold Ga0335077_10251137


Overview

Basic Information
Taxon OID3300033158 Open in IMG/M
Scaffold IDGa0335077_10251137 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1960
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004352Metagenome / Metatranscriptome442Y
F006575Metagenome / Metatranscriptome370Y

Sequences

Protein IDFamilyRBSSequence
Ga0335077_102511372F004352N/AMISRPDQDGDQQVRLLDDAWGKATEHWQDGTARQFGAAQLTPLLQESRSYLEALRRLMDVLEAAERDTEG
Ga0335077_102511375F006575N/APEMEPSMTIEPGTGTSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRASILADTSPPRMPEEGSGDRQAQFLEAYADAGLLWAKVVGSSLALAGVLIERGDWEDVRALTSFLAGAGEETAAAELRIQLGRAAWEAHREQLRAVSNDMPPAAIEPAVNALRAVLREVPEEYPDRNREVNRFLPPLASAIHAIMKQQEADIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICRRPGGKTP
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