NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335077_11654417

Scaffold Ga0335077_11654417


Overview

Basic Information
Taxon OID3300033158 Open in IMG/M
Scaffold IDGa0335077_11654417 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)607
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003119Metagenome / Metatranscriptome506Y
F094274Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335077_116544171F094274GGCGGMTFQALLVSKDEEAIAVLEPVLSGFELNVQSCGYPEAMVRISEQKFDAVLVDFDDPHSAALVLQNAGGA
Ga0335077_116544172F003119AGGGGGMKDIHEVLRQKQAKYAQLGKQIEALQQAAEKLREVAPLLTESEEDDSVLLADGEEQAAGAAKAASATATQPAPAKRGMAPRWP

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