NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326758_100152

Scaffold Ga0326758_100152


Overview

Basic Information
Taxon OID3300033159 Open in IMG/M
Scaffold IDGa0326758_100152 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20791
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (67.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6903Long. (o)-110.7293Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035135Metagenome / Metatranscriptome173Y
F071411Metagenome / Metatranscriptome122Y
F083831Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0326758_10015211F071411GGTGGMSEGDDKMLDAMINMADNRTELEKHMDNIAQQLKDNLQDVIENAIDITLCVSLPSKEQTGFDISIVVGGPNIRLVYDKGVCQLRGAWGSITDTKDVNNEICETILDYLTQTLSSRAKK
Ga0326758_10015225F035135N/AMIVNEKFTTPLQLRRDTLVPCSVYDQQFISSFFFDVIDDKEYEYIMFTFLMKHAFKIYLNVWRQQREFINYLKTFKDEFKDAFDYYQRLSVTTQQRIYETTHVIACFFTFDDDVREILTTYVNELFCNFVNDALR
Ga0326758_10015228F083831N/AMMYKIEKIEINGNKIYCTIYNKYERFNNIPIEKLIVIRKNGKLYAKLKFDKENG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.