NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326758_100170

Scaffold Ga0326758_100170


Overview

Basic Information
Taxon OID3300033159 Open in IMG/M
Scaffold IDGa0326758_100170 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19288
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (90.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6903Long. (o)-110.7293Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013613Metagenome / Metatranscriptome269Y
F028973Metagenome190Y
F032562Metagenome179N
F077496Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0326758_10017016F028973GAGGMAQVTEEEEKRAQETVDEIIRRLEEYHVNGNWDEFFDNDVLDVLLLTTPDKEDVLGFSILLSYGGPNVEFLCDRGDGKIIYSYGDVEVKKDVDPDICDDVINYLDS
Ga0326758_10017019F032562AGGAGGVSEEKGSKETLLSEDRISVLTYADTNHNVTRYYAEVEINGRKTTSEKHASLDVFKDFERTVEELYRKAEILQTLSSPRAADALAEDMLNDIAELVLLTRALLDNIKSWRLWKSQEP
Ga0326758_10017028F077496GGTGGLSAPQEEVGARLGRRKKWSGDAVIMTIYIPLDLKKELEARAAARRKSLSEYAVSLILKGLEAEKETEANIDAKAKEVP
Ga0326758_10017029F013613GGAGGMPRPRKFPDGGVVISTYVPYELYEKVKELARSKGKNISEIAYELIKRGLEASDASAADPPDPPEDALHVALKGLEPLERERVLQFIKGLEDAEAKLAKLGPNVRQARAGRPTLLDVVNQQEVTKLKGTVVDLKRTYERSIKRIVRDPAALNMIGERLLRLMKELGVPP
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