Scaffold Ga0326758_102993

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326758_102993

Scaffold Ga0326758_102993

Overview

Basic Information
Taxon OID	3300033159 Open in IMG/M
Scaffold ID	Ga0326758_102993 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2510
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta → unclassified Vulcanisaeta → Vulcanisaeta sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.6903	Long. (^o)	-110.7293	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101501	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326758_1029935	F101501	N/A	VGTIEDVLRGSVGRSIVGGRFNGEYVGYRLDPIPFIIIRIGESIIEVPITIFKPILEKAYKVPEDYEKRRLLAYEASGIFKIQPYIIQLLILDAIQLGKLLGIRDANTLVKTLLEHPLSRERATLLGRRGVEWLVRAMINVGLLNMPEG

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