NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326758_106096

Scaffold Ga0326758_106096


Overview

Basic Information
Taxon OID3300033159 Open in IMG/M
Scaffold IDGa0326758_106096 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1500
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6903Long. (o)-110.7293Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028973Metagenome190Y
F057170Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0326758_1060961F057170N/AVMCEVVKFLNKRYLVNGIPPDGHFDVVNGMDNLAALITAHLIRWYTKIIRRFSNVKKNDLAAGYVYLYPFNLDIKDTDVEYIYELRPTMDEEKLVYPGGAQKVLDVVRVTAKRYEWWNGTGPTDIFDGTLRDFAKQYCKA
Ga0326758_1060962F028973AGGTGGVAQVTEVEAQKVIDDIIRELEEHHVNGDWDKFFDDEVLDVLLLVTPDKEDVLGFSILLSYGGPNVEFICDRGDGKIIYSYGDVEVKKDVDPDICDDIINYLDS
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