NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326758_109040

Scaffold Ga0326758_109040


Overview

Basic Information
Taxon OID3300033159 Open in IMG/M
Scaffold IDGa0326758_109040 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6903Long. (o)-110.7293Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024139Metagenome / Metatranscriptome207Y
F036314Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0326758_1090402F036314GGAGGMSQEGVAQGSQAPQVSEEEKEKAVDGAMIGITLAQLGILEIELMLAGCLSHPDAFTLESWHRWANEALDHDDLDKALHYAEKITKFLEERQKLCEELRKKSRRHNKRYSRHSSRH
Ga0326758_1090403F024139N/AMAQEVAKKKALKKTLNLKITVYQDPEDNLRFKADIKVNGWTTSFGGWLDRKYIIDYLNMDLYNAWAYLGFVERAKTEESRKNDLDILRLHLEDALAHILAYEIAQDNVVTKEEICNRWWKQVGEKECAYTECAGFAKEDFDACMESCKKELCGS
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