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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033168 Open in IMG/M |
| Scaffold ID | Ga0272423_1000033 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 165171 |
| Total Scaffold Genes | 192 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 69 (35.94%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
| Associated Families | 12 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -74.2 | Long. (o) | 162.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F009580 | Metagenome | 315 | Y |
| F021026 | Metagenome | 220 | Y |
| F021216 | Metagenome | 219 | Y |
| F036035 | Metagenome | 170 | Y |
| F038008 | Metagenome | 166 | Y |
| F041516 | Metagenome | 159 | Y |
| F061399 | Metagenome | 131 | Y |
| F064254 | Metagenome | 128 | Y |
| F087979 | Metagenome | 109 | Y |
| F096307 | Metagenome | 104 | Y |
| F102180 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272423_1000033100 | F064254 | N/A | MISRSFLKFVMFSLHCIIFHSIFYLEHVNKMCLINIXFLLHLHVVIAILSTRLSCRNXLKSIFLMHSCVSNALXDFAQFLCRRRCXXVISDVRYXKXAALNFFLQTTFHVCLICFCMSISCIIISVRXCSISNRDNLCTSSIILFAASFSSTSACFITQCNFSMTS |
| Ga0272423_1000033101 | F038008 | N/A | MKETLEQMKINXSHLYIVTLXSKSLKIVIVANKKMLIRQHNLNTFALKQRVYLNDSDSRDNVTVIMMRMNXELNKRLRELTLVITHHDELKELVARAKHLADVVTANQECHEKIYKVYSDSQIFLKAVKVMISTKDQTRLXXVQTAHENIQS |
| Ga0272423_1000033112 | F036035 | N/A | MKDRMKDDAMQREHHELEKASRNHERDNSDHSNNTLNKHTASISNCDVIKESNERKRK |
| Ga0272423_1000033121 | F001951 | N/A | MTKLKFIDSLRNKRERNKDAVETTVTKMMIFELKELLVNAEMLLTLMNKTIMKTKRD |
| Ga0272423_1000033122 | F009580 | AGCAG | MIEVKVKILRLVDKIICIQISEHDLAQRLNFFCKQRDFFIYTENVTVVNIYDMQSEELLIXAFFSNFAXMLQLAVVTQLSLVANFLDLRNDQNLILNDDNDKA |
| Ga0272423_1000033123 | F021026 | N/A | MIVFCILRQAQSRVLVLALIDSEVSAYIFMNKFFAQQHHFLLHQLTHSCRLQEFENQVTLINDITYVVEITMILDEHIKRLFFYVIELSQYFIIMSLSXLHHYVIDVNFEHNILILSFFFCLNHCYSSLIKIYDLNQQEENFSFKVNKVAFSQSRFQFTHKKQLSSQIIHKKQFSLQIAHKKQFSLQIIHKKQFSS |
| Ga0272423_1000033130 | F096307 | N/A | MLYIVVTQIDASLKENVLKHKKDVDSKDVCDTKKCICHRHLLITRNTKKCVCLEDNRSXLEDARKEKRCXVISESYLSQI |
| Ga0272423_100003335 | F061399 | N/A | MNITYKYVLIFIDCLIKMKHLVLITSMKVEEVINYFYAHVXKHYDLLEFFMSDRDTQFLFDVXKHMCKMLKIDVKLSMMYHSEFNDQIERINAVMKHYLQVFINYMQNDXVKRLSDVEFIVNNASSSITLTSLFLINSNQNSRLDFKFSESLFKNLTSQAQDKLINVEEFIKKMKKLTEHLRDEMLIAQIIYKFNVNLFHRSCFKYFVKDEVXLNACNLSIARLVVKLNDHNIDLFKIKHVFKNNSLIIELNLSAVMKIHSIFHVILLNHIASDFLSSQHQKLRELIIIKNDERFXYVNSILNFKHDKCYNSSLLKYYIDXENHFSTXESFHLLNNCEQVLDEYHLVNSVVKESHVLSCVMFQCQCQKL |
| Ga0272423_100003338 | F087979 | N/A | MKEKNENSTFIYMNRAESRLDSNFIDLRLQKFMHMTEMIKTELLKLN |
| Ga0272423_100003390 | F021216 | N/A | MSQMKSRMKSNAMKREHHELEKALRNRERSNDDHSNDTFNEHTKSISSCDVIKESDEREK |
| Ga0272423_100003393 | F102180 | GAG | MTAMRINXELNKRLKESTLVITHHEELKELIAKMKHLTDVVTENQECHEKIYKVYSDSQTSLKTVKVMILTKDQTRLQXVQIVHESI |
| Ga0272423_100003396 | F041516 | N/A | MIMLQTLTDNTQMTQKAIHIHEAYNSSLKDHEVIYEKESLSNIEKTLHMLKECVLLKDFNLYHLT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |