Scaffold Ga0272423

Basic Information
Taxon OID	3300033168 Open in IMG/M
Scaffold ID	Ga0272423_1000049 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033168 Open in IMG/M

Scaffold ID

Ga0272423_1000049 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	144058
Total Scaffold Genes	155 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (21.29%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

144058

Total Scaffold Genes

155 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (21.29%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (7.69%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-74.2	Long. (^o)	162.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-74.2

Long. (^o)

162.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F008668	Metagenome	329	Y
F008735	Metagenome	328	Y
F011463	Metagenome	290	Y
F028367	Metagenome	191	Y
F038009	Metagenome	166	Y
F066295	Metagenome	126	Y
F074204	Metagenome	119	Y
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y
F087978	Metagenome	109	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100004913	F076668	N/A	MQYDLFIADKLILACASARKSXMNSTDSYVIKEIISALESTKKIMHMSNALLTDMLMLCNRKLKDATNQKXLHCARFENIRSQSKILFSKXFSNDLXERLCTTVLTQICYNTTIAFCALSXMLFKKSLKTLCAFLXKVSALLFCIITFVVEFSLTFCSMQTSTXQ
Ga0272423_100004914	F086375	N/A	MFTLFVNSKSITSQNRGENXFNEIKEHYKRQNNDHVIIFKXLHKLRQFNVXKEVNEIDKAVMKDNVRDQVEQERKNNDIHDNASQ
Ga0272423_1000049154	F008668	N/A	MISFYFNKEFHSXMSFNLNTTDYKITYEHLEVRKVDDIIIXMKELLIFNHQQLKKMKQIIKVQISKHKXNIIYKVND
Ga0272423_100004946	F066295	N/A	MFYEIXKTQSLILNEETDXLYKSNKQQEDEIKELKIKLQAKENTSSDFIYSERSRSQKIFDSSLFTDEKNSIXKNXYGKIQNKLKINVNLFSNEXVQLSYIHSRLFDDAAEITQARCKRDCVNFYKIIDNLLKKLAQLFNDLNKKVNFHRKYYNLIQRSKKFSEFYTQFQXLFFYLNYHEKQLIVDLKDKINLHLXFIXVN
Ga0272423_100004948	F028367	N/A	LCKLDEILLKENYFEKSFLIDAHLISQNXSFSLRLLIDSDSVIYMIIHSNLVNKVCEKLRIQFISLTKEKLIRDYDEKIFKKIITHKILFNLIIKSHKKLIISMLITDIDHHEVILSKLXMNKNKILLNMXNNVIVFSNQLNTSFSIFSISLNSKHSS
Ga0272423_100004953	F002432	N/A	MQDDXIKXIFMMKFSDNSNIFSITSMISFYFNKRFHSXMSFDSDTTDYKTTCEHLEVKKVNNIIIQMKELLNFNHQQLKKMKLIIEVQINKPRXDITYEVNDXVXLSFRNVKTTRLCKDLKDKQLNFYQITVKVSIFYHLHLSISIKHLHLMFSSKLLQSYSEDLLSEQHLKSLRSITIKDDEHXKINDMLNFRCYQDQIQYKVK
Ga0272423_100004987	F087978	N/A	MFSSKLLQSYSEDLLSEQHSESLRSITIKDDEHXKINDILNFKRYXDQIQYKVKXTDLDRNDKXYYVNKEKFNDSEKVLNEFHKLYLNKSR
Ga0272423_100004988	F008668	N/A	MSFNSNMTDYKTTYERLEARKVNDIIIXIKELLNFNHQQLKKTKLIIKV
Ga0272423_100004993	F011463	GAG	MSFNLNTTNYETIRERIEARKVNDIIMQMKELLSFDCQQLKKMKQIIEAQINKHRXNVIYEVNNXVXLFFKNIKTTRSCKDLKDKQLELYQIIVKAEIFYHLHLSISIKHLHLMFSLKLLRFYSDDSLSKQQSESFRLIIIKDNKYXEIDDILNSQCYQDRIQYKIKXTELDQNDKXYYVDKEEFNNFDEVLNKFHKLYLNKSRYC
Ga0272423_100004995	F008735	N/A	MKEVMIIVHVHTLYQTLLFCIQLIFVSFIFRYVEKLLEFKSDEDSDRVCKKMNDKRRLIVQDLCDNLSYHHKKLRIQLYINXRTENDEXNDNIMLSNLILKLLHCIKDLDXIFNHTLSELFNSMLIIDQEIVRXLHLSERITRRDFNIXKRCRKCKSFVMSKTELD
Ga0272423_100004997	F001951	N/A	MMIITKLRFIDLSRNEREKNEDTVEITVTKVMIFELKELLIDAEMFLTLTNEMMMKIK
Ga0272423_100004998	F074204	N/A	MIVFCILRQAQSKVLTFALIDSEVSTYVFMNKFFAQQHHLLLHQLTHSRRLXEFDDQVTLIDDIIHVVEITMILD
Ga0272423_100004999	F038009	N/A	MSSMIKASSFQLNYVKMYRRLIELICLRNNRSSKEERILTLDFXXVFLLNDLKNMTKSFLFQTRNKTEXDLFLVNELNISLLLVSEXRVILLLASRXETELLLTSKLRTELLLVSELKTELLLSSELRTKLLFASKLNAELLLVNNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272423_1000049

Overview

Ecosystem & Geography

Associated Families

Sequences