NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000069

Scaffold Ga0272423_1000069


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000069 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)125703
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (61.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F074204Metagenome119Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_1000069134F102181N/AMKKVTIIVHVHALYQTLLSCIQLIFVSLILRYVEKLLESRSDDDSDRIRRKMNDERRLIVQDLCNDLSYHRKRLRIQLYID
Ga0272423_1000069136F001951N/AMMKLRFIDSSRDEKERDEDIVETTVTEMMIFELKELLIDAEMLLTLTNETMMKTKRD
Ga0272423_1000069137F055319AGCAGMIEVRVRRLRLVDKMICIQISERDLAQKLNFFRKQRDFFIYIDDVIVVDVHDTQSEELLI
Ga0272423_1000069138F074204N/AMIVFCILRQAQSRVFALALIDSEVFAYVFMNKFFAQQHHLLLHQLIHSRRLQEFDNQVALIDDITHVIEITMILNEHIERLFFYVTELSQYLIIMSLS
Ga0272423_1000069142F021896N/AVTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMNERSSYSTIVIDESSIEVREI
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Institute for Fundamental Biomedical Research
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