NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000109

Scaffold Ga0272423_1000109


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000109 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102372
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (47.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021452Metagenome218Y
F055319Metagenome138Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_1000109114F102181N/AMKEIMIIVHVHALYQTLLSCIQSIFVLLIFKYVKKLLEFRSNEDNDKICKKMNDEKRLIVQDLCNDLSYYCKKLRIQLYIN
Ga0272423_1000109116F001951N/AMMIMTKLKFIDSSRNKKEKDENTVETIITEMMIFKFEKLLIDAKIFLTLINETIMKMK
Ga0272423_1000109119F021452N/AMLDDSFNFKPFIVNVILNSLEKIFRFLALIDIKVTDMMFINDSLISELCECFDIQSISLFKSKSIRLYDETLDRRSITHALYISITIQEHKNEMMSLLITCLDQHKIIIDNL
Ga0272423_100010995F055319AGCAGMIEVRVKRLRLVDKMIYIQIFEHDLAQKLNFSCRQQDFFIYTNDIIVVNVHDTQSEELFI
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