NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000178

Scaffold Ga0272423_1000178


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000178 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84204
Total Scaffold Genes98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (54.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F021452Metagenome218Y
F061401Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100017811F061401N/ALNNDQRVIQEIKNKIKRVNDLFKTIFHRVIVVTQSVNHLKSDQLKSRDAILTNVKEADILVESCFICHKSDHSSKECFNRSTRINAVNNKYDRFDFNSNFDSKTSHLFKSH
Ga0272423_100017815F008668GAGMTNYETTHERLKARKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHRRNIIYEVDDWV
Ga0272423_100017897F021452GAGMLISCFINMLDDSFDFKLFIVNVILNSLEKIFRFLILINIEVTDMMFIDDSLISELCERFDIQSISLFKSKLIHSYDKIFNRRSITHALYISVTIQEHKNEMMSLLITRLDQHKIIIDNLSSTKCSTANFLLNDRI
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