NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000210

Scaffold Ga0272423_1000210


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000210 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76608
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (46.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F013598Metagenome269Y
F036036Metagenome170Y
F094626Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100021010F013598N/AMNFIIDLFDSYNYNAILTVICKLLKERHYISCIIDDEDITVEKTAEMLLQ
Ga0272423_100021011F036036N/AMLVSLFHHLFSCFDQSFASEDQCLVHVIEYIFNSDDLQALVSAFILDDVRIEAHTRMKVLIHEEEDQEND
Ga0272423_100021012F094626N/AMFLNERNIVTMRLFKKLDDKMLNLFKITDSVDFFYKLKLSDTMHIHDVFHSELLYSVVDDFLSDQKNKFLKSIVMNNENK
Ga0272423_10002106F003820N/ALKEIYDELNKNQKSRREYNALRQADKSFNVFYFDFMKLFSYLNYDDCTLMNDLQNKINNRLQNALSVCLKNFTSLLHLKKFLQDVNTKQQVNYQLRSERHTVIVKVTVVSDKCATSLSMMTSVIDYVKSTIFFIFESARSSIICYICKTSNHLFKNCSQLNKIDIFASQAFISRLHEIVISKNKENEKMSSFENSEAKN
Ga0272423_10002107F000597GAGGVTFIKDAMKDVLISLTMSMSNDSFASESLTIECVLSSNEISYSLKLLINIEAADYSFIDEVTAQIVCDQLQIKSLTLIKAKSIQEFDDHYAKKLIIHVIYSNLTVQDHTIDTAFMLIT
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