NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000215

Scaffold Ga0272423_1000215


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000215 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75532
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (48.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F021452Metagenome218Y
F025887Metagenome199Y
F065269Metagenome127Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100021523F025887N/AMSDDSFDFKSFTVDVILSNLEKIFKSLALIDIEVTDMIFIDESLMSELCECFDIQSILLSKSKSI
Ga0272423_100021524F065269N/AMTRSSESASIARYELQNARRESLLSQNRTTSEEEDMNASLNTKEKNTNALFFDHKMIKISISTELNA
Ga0272423_100021526F081945N/AMFSHSSTEEHFKEFQNHFFQIFDADSSKSRTKSSSAASFIHEDDESFTETIIFFVFYEI
Ga0272423_100021528F006206GAGLCKLNEILSKENYFEKSFLIDAHLISQNQSFNLHFLINSDLIVYTIIHFNLVDKVCEKLKIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIESHKKLTVSMLIADIDYHEVILSKF
Ga0272423_10002158F065269N/AMARSSESVSIARYELQNARRESLLSQNQTASEEEDTNASLNTEEENTNALLFDHKVIKISISTELNA
Ga0272423_10002159F021452N/AMSDDSFDFKSFIVDVILNSLEKIFRSLALIDTEVTDMTFIDESLMSELCERFDIQSISLSKSKLIQSYDEISDRKSITHALYTSIMIQEHKNEMMSLLITRLDQHKIIIENL
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