NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000384

Scaffold Ga0272423_1000384


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000384 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56918
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (23.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F011463Metagenome290Y
F028367Metagenome191Y
F074202Metagenome119Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100038423F074202N/AMKLXIFKMCVYEXSLFTCXKEIYMYIEKCFQLLYRXLRSQSLSLTKLLEKCVSNFMKTVDCKMNCKMNCKTIYVSFLLMSSCLLCSDNAFNLALFLNDDFFLKLVISKLRLRVETEFNFKEEVILRCSFFTAKDDILDFSFNLKIAMNFIKFLXFTIFHNDXSFFFNLFLLIKCDVTQSKXADAENRAFKSEVVVDLAVLSNINNISSSKFENLDCEDVMKRSTSIASLFFSSDIIN
Ga0272423_100038431F002432N/AMQNDXAKXLSMIEFSENSNIFLIISMISFYFNKRFHSXISFNSDTTDYETIRERLKARKVDDIIIQMKELLIFDHQQLKKMKQIIEAQINKHKRNIIYEVDDXVXLFFRNIKTTRSCKDLKDKQLEFYQITIKVKIFYHFHLLISMKQLHSMFSSKLLYSYFDELLSEQHSESFKSLTIEDDEHXKINDILNFRCYXDQIQYKIK
Ga0272423_100038442F081945N/AMSSHSSIEERFKEFRNHFSQTFDADFLKLRTKSSSAASFIHEDDESFAEMIKLLMFYEI
Ga0272423_100038444F028367N/ALCKLDEILSKENYFEKSFLINAHLISQNQSFSLCSLIDSDSVIYMIIHSNLVDKVCEKLKIQSISLTKEKLIKNYDGKIFKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNDVIVFLNQLNTSISIFSILLNSKHSS
Ga0272423_100038447F011463N/AMKELLNFNHQQLKKMKLIIEVQINKHRXDVTYEVNNXAXLSFRNVKTTRLCKDLKDKQLNFYQITIKVSIFYHLHLSISMKHLHLMFSSKLLQSYSEDSLSKQHLESLRSITIKDNKHXEINDILNFRCYRDXIQYKVKXTDLDKNDEXYYVDKEKFNDSEKVLNEFHKLYSNKSC
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