Scaffold Ga0272423

Basic Information
Taxon OID	3300033168 Open in IMG/M
Scaffold ID	Ga0272423_1000395 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033168 Open in IMG/M

Scaffold ID

Ga0272423_1000395 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56225
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (31.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

56225

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (31.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-74.2	Long. (^o)	162.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-74.2

Long. (^o)

162.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F017767	Metagenome	238	Y
F021026	Metagenome	220	Y
F064254	Metagenome	128	Y
F086377	Metagenome	110	Y
F087979	Metagenome	109	Y
F104132	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_10003951	F104132	AGAAG	MNEILNFRIKNSQLEYLIKXTEIEENSXVKFANVMNVIEVINVYHARNLDRSNKNSXIAYVQESSNSEYESEN
Ga0272423_100039510	F003820	N/A	MKLFSYLEYDNHILMNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVSDKRATSLSITTLIINYVKSTIFSISESARSSIICYICNIFDHLFKNCFQLNKIDTSASCAFTSRLHEIIISKNKENEKMFFENNEAKN
Ga0272423_100039511	F017767	N/A	MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVC
Ga0272423_100039516	F087979	N/A	MKEKNENSAFIYMNXTESRLNNSFIDLKLQKFAHMIKMIETKLLKLN
Ga0272423_10003952	F086377	N/A	MIQHFXDQKQRILILDCDSVQISIVHTEVKFFFKFLDEENKDDHLKVTDLNEIFAQILIQITMKF
Ga0272423_100039520	F021026	N/A	MIVFCILHQAQSKVFILLIDSEIFAYIFMNKFFTQQHHLLLYQLTHSCRLQEFDDQVTLIHDIIHVVKITMILNEHIEKLFFYVIELSQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCFNHYCSSLIKIYDLNQQEENFSFKVNKVAFFQSHSQFTHKK
Ga0272423_100039525	F064254	N/A	MQELYEFISFLFFLSFIXFFNDVTAXNXFSMLVESIIQMIIVAALMISKSFLKFVMFFSHCIAFHSTFHLKHVNKMCLIDIXSLSHLHVIIVTLNTRLSCRNXLKSIFVMHSCVNNALXNFAXFLCSCRCQYVIFDVKYXKXAALNFSFQITLHVCLICFCMSISLVITSVRXYSVRAIKTNHVCC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272423_1000395

Overview

Ecosystem & Geography

Associated Families

Sequences