NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000411

Scaffold Ga0272423_1000411


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000411 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55282
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (52.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F013598Metagenome269Y
F032102Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_10004111F013598N/AMNFIIDISDLSKYNAILTIICRLSKKRHYISCITDDEDITVEKTAEMLIQ
Ga0272423_10004112F032102N/AMKIADLKKNISESIYKQILKINEINENCTLLREAIARNETQYEDIKLKNCRTQNEILYHDSQL
Ga0272423_10004117F003820N/AMKLFSYLEYDDCTLMNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQRVNYQLRSKRCIVIIKVTVIPDKCATSLLVTTLIIDYVKSIIFSIFESARSLIICYICKTLNHLFKNCSQLNKIDTSASHACISRLHEIIISKNKENEKISFKNSETKN
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